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1

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome

Albert, Istvan, Mavrich, Travis N., Tomsho, Lynn P., Qi, Ji, Zanton, Sara J., Schuster, Stephan C., Pugh, B. Franklin

Journal:

Year:

2007

Language:

english

File:

PDF, 988 KB

english, 2007

2

Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

Ho Sung Rhee, B. Franklin Pugh

Journal:

Year:

2011

Language:

english

File:

PDF, 2.40 MB

english, 2011

3

Genome-wide structure and organization of eukaryotic pre-initiation complexes

Rhee, Ho Sung, Pugh, B. Franklin

Journal:

Year:

2012

Language:

english

File:

PDF, 2.37 MB

english, 2012

4

SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes

Yen, Kuangyu, Vinayachandran, Vinesh, Pugh, B. Franklin

Journal:

Year:

2013

Language:

english

File:

PDF, 2.26 MB

english, 2013

5

Subnucleosomal Structures and Nucleosome Asymmetry across a Genome

Rhee, Ho Sung, Bataille, Alain R., Zhang, Liye, Pugh, B. Franklin

Journal:

Year:

2014

Language:

english

File:

PDF, 3.67 MB

english, 2014

6

The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression

Schneider, Maren, Hellerschmied, Doris, Schubert, Tobias, Amlacher, Stefan, Vinayachandran, Vinesh, Reja, Rohit, Pugh, B. Franklin, Clausen, Tim, Köhler, Alwin

Journal:

Year:

2015

Language:

english

File:

PDF, 3.13 MB

english, 2015

7

Erratum: Genome-wide structure and organization of eukaryotic pre-initiation complexes

Sung Rhee, Ho, Franklin Pugh, B.

Journal:

Year:

2012

File:

PDF, 26 KB

2012

8

Genomic Nucleosome Organization Reconstituted with Pure Proteins

Krietenstein, Nils, Wal, Megha, Watanabe, Shinya, Park, Bongsoo, Peterson, Craig L., Pugh, B. Franklin, Korber, Philipp

Journal:

Year:

2016

Language:

english

File:

PDF, 10.78 MB

english, 2016

9

Influences of inâstream habitat and upstream landâuse on site occupancy of the Kanawha darter ( Etheostoma kanawhae ): A narrowly distributed species from the New River (Upper Kanawha Basin)

Pugh, M. Worth, Pandolfi, Gary, Franklin, Thomas, Gangloff, Michael M.

Journal:

Aquatic Conservation: Marine and Freshwater Ecosystems

Year:

2020

File:

PDF, 12.24 MB

2020

10

AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis

James D. Higgins, Julien Vignard, Raphael Mercier, Alice G. Pugh, F. Chris H. Franklin, Gareth H. Jones

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 646 KB

english, 2008

11

Nucleosome positions predicted through comparative genomics

Ioshikhes, Ilya P, Albert, Istvan, Zanton, Sara J, Pugh, B Franklin

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 341 KB

english, 2006

12

Nucleosome positioning and gene regulation: advances through genomics

Jiang, Cizhong, Pugh, B. Franklin

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 817 KB

english, 2009

13

Is acetylation the key to opening locked gates?

Pugh, B Franklin

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 428 KB

english, 2004

14

A preoccupied position on nucleosomes

Pugh, B Franklin

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 188 KB

english, 2010

15

Dynamic interplay of TFIIA, TBP and TATA DNA

Christian A Weideman, Robert C Netter, Lawrence R Benjamin, John J McAllister, Lumelle A Schmiedekamp, Robert A Coleman, B.Franklin Pugh

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 819 KB

english, 1997

16

Erratum

Andrew D Basehoar, Sara J Zanton, B.Franklin Pugh

Journal:

Year:

2004

File:

PDF, 19 KB

2004

17

High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin

Zhenhai Zhang, B. Franklin Pugh

Journal:

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

18

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

Kuangyu Yen, Vinesh Vinayachandran, Kiran Batta, R. Thomas Koerber, B. Franklin Pugh

Journal:

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

19

HATs off to PIC Assembly

B. Franklin Pugh

Journal:

Year:

2006

Language:

english

File:

PDF, 43 KB

english, 2006

20

Interaction of Transcriptional Regulators with Specific Nucleosomes across the Saccharomyces Genome

R. Thomas Koerber, Ho Sung Rhee, Cizhong Jiang, B. Franklin Pugh

Journal:

Year:

2009

Language:

english

File:

PDF, 2.16 MB

english, 2009

21

A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces

Bryan J. Venters, Shinichiro Wachi, Travis N. Mavrich, Barbara E. Andersen, Peony Jena, Andrew J. Sinnamon, Priyanka Jain, Noah S. Rolleri, Cizhong Jiang, Christine Hemeryck-Walsh, B. Franklin Pugh

Journal:

Year:

2011

Language:

english

File:

PDF, 2.44 MB

english, 2011

22

Identification and Distinct Regulation of Yeast TATA Box-Containing Genes

Andrew D Basehoar, Sara J Zanton, B.Franklin Pugh

Journal:

Year:

2004

Language:

english

File:

PDF, 441 KB

english, 2004

23

Control of gene expression through regulation of the TATA-binding protein

B.Franklin Pugh

Journal:

Year:

2000

Language:

english

File:

PDF, 1.14 MB

english, 2000

24

Mechanisms of transcription complex assembly

B Franklin Pugh

Journal:

Current Opinion in Cell Biology

Year:

1996

Language:

english

File:

PDF, 1.08 MB

english, 1996

25

TFIIA Regulates TBP and TFIID Dimers

Robert A Coleman, Andrew K.P Taggart, Sandeep Burma, John J Chicca II, B.Franklin Pugh

Journal:

Year:

1999

Language:

english

File:

PDF, 268 KB

english, 1999

26

A Role for TBP Dimerization in Preventing Unregulated Gene Expression

Amy J Jackson-Fisher, Carmelata Chitikila, Madhusmita Mitra, B.Franklin Pugh

Journal:

Year:

1999

Language:

english

File:

PDF, 351 KB

english, 1999

27

Interplay of TBP Inhibitors in Global Transcriptional Control

Carmelata Chitikila, Kathryn L. Huisinga, Jordan D. Irvin, Andrew D. Basehoar, B.Franklin Pugh

Journal:

Year:

2002

Language:

english

File:

PDF, 774 KB

english, 2002

28

A Genome-Wide Housekeeping Role for TFIID and a Highly Regulated Stress-Related Role for SAGA in Saccharomyces cerevisiae

Kathryn L. Huisinga, B. Franklin Pugh

Journal:

Year:

2004

Language:

english

File:

PDF, 388 KB

english, 2004

29

Isolation and characterization of the Drosophila gene encoding the TATA box binding protein, TFIID

Timothy Hoey, Brian David Dynlacht, M.Gregory Peterson, B.Franklin Pugh, Robert Tjian

Journal:

Year:

1990

Language:

english

File:

PDF, 1.85 MB

english, 1990

30

Mechanism of transcriptional activation by Sp1: Evidence for coactivators

B.Franklin Pugh, Robert Tjian

Journal:

Year:

1990

Language:

english

File:

PDF, 2.14 MB

english, 1990

31

The TATA-binding protein and associated factors are components of pol III transcription factor TFIIIB

Andrew K.P. Taggart, Timothy S. Fisher, B.Franklin Pugh

Journal:

Year:

1992

Language:

english

File:

PDF, 4.51 MB

english, 1992

32

Molecular biology: The ends justify the means

Pugh, B. Franklin

Journal:

Year:

2013

Language:

english

File:

PDF, 329 KB

english, 2013

33

Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing

Li, Jian, Liu, Yingyun, Rhee, Ho Sung, Ghosh, Saikat Kumar B., Bai, Lu, Pugh, B. Franklin, Gilmour, David S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

34

Ultra-high resolution mapping of protein-genome interactions using ChIP-exo

B Franklin Pugh

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 68 KB

english, 2012

35

A compiled and systematic reference map of nucleosome positions across theSaccharomyces cerevisiaegenome

Cizhong Jiang, B Franklin Pugh

Journal:

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

36

Chromatin meets RNA polymerase II

Bryan J Venters, B Franklin Pugh

Journal:

Year:

2007

Language:

english

File:

PDF, 49 KB

english, 2007

37

A TATA binding protein regulatory network that governs transcription complex assembly

Kathryn L Huisinga, B Franklin Pugh

Journal:

Year:

2007

Language:

english

File:

PDF, 2.78 MB

english, 2007

38

Genome-wide analysis of protein-DNA interactions in living cells

B Franklin Pugh, David S Gilmour

Journal:

Year:

2001

Language:

english

File:

PDF, 73 KB

english, 2001

39

Genome-wide interplay between chromatin and the transcription machinery

B Franklin Pugh

Journal:

Epigenetics & Chromatin

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

40

Genomic organization of human transcription initiation complexes

Venters, Bryan J., Pugh, B. Franklin

Journal:

Year:

2013

Language:

english

File:

PDF, 6.68 MB

english, 2013

41

Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP

Pugh, B.Franklin, Schutte, Brian C., Cox, Michael M.

Journal:

Journal of Molecular Biology

Year:

1989

Language:

english

File:

PDF, 2.79 MB

english, 1989

42

General mechanism for RecA protein binding to duplex DNA

Pugh, B.Franklin, Cox, Michael M.

Journal:

Journal of Molecular Biology

Year:

1988

Language:

english

File:

PDF, 2.08 MB

english, 1988

43

Slow Dimer Dissociation of the TATA Binding Protein Dictates the Kinetics of DNA Binding

Robert A. Coleman and B. Franklin Pugh

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.51 MB

english, 1997

44

A Comprehensive and High-Resolution Genome-wide Response of p53 to Stress

Chang, Gue Su, Chen, Xiangyun Amy, Park, Bongsoo, Rhee, Ho Sung, Li, Pingxin, Han, Kang Hoo, Mishra, Tejaswini, Chan-Salis, Ka Yim, Li, Yunfei, Hardison, Ross C., Wang, Yanming, Pugh, B. Franklin

Journal:

Year:

2014

Language:

english

File:

PDF, 6.02 MB

english, 2014

45

Dimer Dissociation and Thermosensitivity Kinetics of the Saccharomyces cerevisiae and Human TATA Binding Proteins †

Jackson-Fisher, Amy J., Burma, Sandeep, Portnoy, Matthew, Schneeweis, Lumelle A., Coleman, Robert A., Mitra, Madhusmita, Chitikila, Carmelata, Pugh, B. Franklin

Journal:

Year:

1999

Language:

english

File:

PDF, 129 KB

english, 1999

46

Interpretation and Classification of Partially Harvested Forest Stands in the Fundy Model Forest Using Multitemporal Landsat TM Digital Data

Franklin, S.E., Moskal, L.M., Lavigne, M.B., Pugh, K.

Journal:

Canadian Journal of Remote Sensing

Year:

2000

Language:

english

File:

PDF, 9.70 MB

english, 2000

47

CD19 Selection Improves the Sensitivity of B Cell Lymphoma Detection

PUGH, R.E., BITTER, M.A., SHPALL, E.J., HAMI, L.S., WOLF, D.M., FRANKLIN, W.A.

Journal:

Journal of Hematotherapy

Year:

1998

Language:

english

File:

PDF, 5.73 MB

english, 1998

48

Multi-Institutional Phase I/II Trial of Stereotactic Body Radiation Therapy for Liver Metastases

Rusthoven, K. E., Kavanagh, B. D., Cardenes, H., Stieber, V. W., Burri, S. H., Feigenberg, S. J., Chidel, M. A., Pugh, T. J., Franklin, W., Kane, M., Gaspar, L. E., Schefter, T. E.

Journal:

Journal of Clinical Oncology

Year:

2009

Language:

english

File:

PDF, 730 KB

english, 2009

49

Protein–DNA binding in high-resolution

Mahony, Shaun, Pugh, B. Franklin

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 715 KB

english, 2015

50

Genome-Wide Modeling of Transcription Preinitiation Complex Disassembly Mechanisms using ChIP-chip Data

Samorodnitsky, Eric, Pugh, B. Franklin, Margalit, Hanah

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.80 MB

english, 2010